WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  For model 2, authors used 100 permutations to estimate the FDR threshold. Per permutation, genotypes and ages were independently randomly distributed, keeping the among-gene structure intact. Then for each spot (23,232) on the array, model 2 was tested. The obtained P-values were used to estimate a threshold for each of the explanatory factors. Authors also used a genome-wide threshold of -log10 P-value = 2, which resembles an FDR of 0.072 and 0.060 for marker and the interaction age-marker for the developing worms and FDR of 0.050 and 0.065 for marker and age-marker for the aging worms. For the physiological age effect, authors used a log10 P-value = 8 in developing worms (0.012 FDR) and -log10 P-value = 6 (0.032 FDR). Description  Genes with expression level regulated by genotype (N2 vs CB4856) and age at old adults stage (214 hours at 24 centigrade).
Primary Identifier  WBPaper00040858:eQTL_age_regulated_aging

0 Anatomy Terms

1000 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000018 abl-1 M79.1 Caenorhabditis elegans
WBGene00000023 abt-5 Y53C10A.9 Caenorhabditis elegans
WBGene00000024 abu-1 AC3.3 Caenorhabditis elegans
WBGene00000029 abu-6 C03A7.7 Caenorhabditis elegans
WBGene00000031 abu-8 C03A7.14 Caenorhabditis elegans
WBGene00000040 aco-1 ZK455.1 Caenorhabditis elegans
WBGene00000072 add-1 F39C12.2 Caenorhabditis elegans
WBGene00000079 adr-1 H15N14.1 Caenorhabditis elegans
WBGene00000085 aex-2 T14B1.2 Caenorhabditis elegans
WBGene00000088 aex-5 F32A7.6 Caenorhabditis elegans
WBGene00000100 ajm-1 C25A11.4 Caenorhabditis elegans
WBGene00000101 aka-1 D1022.7 Caenorhabditis elegans
WBGene00000103 akt-2 F28H6.1 Caenorhabditis elegans
WBGene00000108 alh-2 K04F1.15 Caenorhabditis elegans
WBGene00000114 alh-8 F13D12.4 Caenorhabditis elegans
WBGene00000116 alh-10 C54D1.4 Caenorhabditis elegans
WBGene00000133 amt-1 C05E11.4 Caenorhabditis elegans
WBGene00000165 aps-3 Y48G8AL.14 Caenorhabditis elegans
WBGene00000173 aqp-5 C35A5.1 Caenorhabditis elegans
WBGene00000174 aqp-6 C32C4.2 Caenorhabditis elegans
WBGene00000186 ark-1 C01C7.1 Caenorhabditis elegans
WBGene00000196 aars-1 W02B12.6 Caenorhabditis elegans
WBGene00000198 art-1 C15F1.6 Caenorhabditis elegans
WBGene00000201 arx-3 Y79H2A.6 Caenorhabditis elegans
WBGene00000204 arx-6 C35D10.16 Caenorhabditis elegans
WBGene00000213 asm-3 W03G1.7 Caenorhabditis elegans
WBGene00000214 asp-1 Y39B6A.20 Caenorhabditis elegans
WBGene00000226 atl-1 T06E4.3 Caenorhabditis elegans
WBGene00000228 atn-1 W04D2.1 Caenorhabditis elegans
WBGene00000240 pah-1 K08F8.4 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 7-10 days after L4-adult molt. 10-13 days after first cleavage. 7-10 days post-L4 adult hermaphrodite Ce WBls:0000070

0 Processes

0 Regulated By Gene

0 Regulated By Molecule