WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  To identify genes that are significantly enriched by mRNA tagging, we first normalized the total amount of Cy3 and Cy5 signal to each other in each hybridization. We measured the ratio of the signals from the co-immunoprecipitated mRNA (Cy5) to total RNA in the cell extract (Cy3), and calculated the percentile rank for each gene relative to all genes in each hybridization. The mean percentile rank was determined from eight repeats of the mRNA-tagging experiment. Student's t-test was used to determine which genes showed a mean enrichment significantly greater than the median enrichment for all genes (P<0.001). Description  Genes enriched in intestine.
Primary Identifier  WBPaper00026980:intestine_enriched

1 Anatomy Terms

Definition Name Synonym Primary Identifier
A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages. intestine gut WBbt:0005772

2590 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000010 aat-9 Y53H1C.1 Caenorhabditis elegans
WBGene00000040 aco-1 ZK455.1 Caenorhabditis elegans
WBGene00000041 aco-2 F54H12.1 Caenorhabditis elegans
WBGene00000055 acr-16 F25G6.3 Caenorhabditis elegans
WBGene00000088 aex-5 F32A7.6 Caenorhabditis elegans
WBGene00000089 aex-6 Y87G2A.4 Caenorhabditis elegans
WBGene00000093 agt-1 Y62E10A.5 Caenorhabditis elegans
WBGene00000097 aip-1 F58E10.4 Caenorhabditis elegans
WBGene00000107 alh-1 F54D8.3 Caenorhabditis elegans
WBGene00000110 alh-4 T05H4.13 Caenorhabditis elegans
WBGene00000112 alh-6 F56D12.1 Caenorhabditis elegans
WBGene00000116 alh-10 C54D1.4 Caenorhabditis elegans
WBGene00000117 alh-11 F42G9.5 Caenorhabditis elegans
WBGene00000118 alh-12 Y69F12A.2 Caenorhabditis elegans
WBGene00000121 aly-2 F23B2.6 Caenorhabditis elegans
WBGene00000122 aly-3 M18.7 Caenorhabditis elegans
WBGene00000150 apm-1 F55A12.7 Caenorhabditis elegans
WBGene00000151 apn-1 T05H10.2 Caenorhabditis elegans
WBGene00000175 aqp-7 M02F4.8 Caenorhabditis elegans
WBGene00000178 aqp-10 ZK1321.3 Caenorhabditis elegans
WBGene00000179 aqp-11 ZK525.2 Caenorhabditis elegans
WBGene00000181 ard-1 F01G4.2 Caenorhabditis elegans
WBGene00000182 arf-1 B0336.2 Caenorhabditis elegans
WBGene00000189 arl-5 ZK632.8 Caenorhabditis elegans
WBGene00000190 warf-1 F45E4.1 Caenorhabditis elegans
WBGene00000203 arx-5 Y37D8A.1 Caenorhabditis elegans
WBGene00000204 arx-6 C35D10.16 Caenorhabditis elegans
WBGene00000209 asg-1 K07A12.3 Caenorhabditis elegans
WBGene00000210 asg-2 C53B7.4 Caenorhabditis elegans
WBGene00000211 asm-1 B0252.2 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

2 Processes

Primary Identifier
WBbiopr:00000037
WBbiopr:00000041

0 Regulated By Gene

0 Regulated By Molecule