WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 202, 172183_at-176110_at, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:172183_at-176110_at

0 Anatomy Terms

333 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000033 abu-10 F35A5.3 Caenorhabditis elegans
WBGene00000049 acr-10 R02E12.8 Caenorhabditis elegans
WBGene00000083 adt-2 F08C6.1 Caenorhabditis elegans
WBGene00000139 amx-3 F25C8.2 Caenorhabditis elegans
WBGene00000227 atm-1 Y48G1BL.2 Caenorhabditis elegans
WBGene00000383 cdc-14 C17G10.4 Caenorhabditis elegans
WBGene00000424 ced-10 C09G12.8 Caenorhabditis elegans
WBGene00000511 ckb-1 B0285.8 Caenorhabditis elegans
WBGene00000534 cpi-2 R01B10.1 Caenorhabditis elegans
WBGene00000585 cogc-2 C06G3.10 Caenorhabditis elegans
WBGene00000700 col-126 F54D1.2 Caenorhabditis elegans
WBGene00000701 col-127 F54D1.3 Caenorhabditis elegans
WBGene00000722 col-149 B0024.1 Caenorhabditis elegans
WBGene00000730 col-157 T11F9.9 Caenorhabditis elegans
WBGene00000883 cyn-7 Y75B12B.2 Caenorhabditis elegans
WBGene00000987 dhs-24 Y60A3A.10 Caenorhabditis elegans
WBGene00001466 gpla-1 F58H1.4 Caenorhabditis elegans
WBGene00001651 gon-2 T01H8.5 Caenorhabditis elegans
WBGene00001662 gop-3 C34E10.1 Caenorhabditis elegans
WBGene00001811 haf-1 C30H6.6 Caenorhabditis elegans
WBGene00001947 his-73 W09H1.2 Caenorhabditis elegans
WBGene00001980 hmr-1 W02B9.1 Caenorhabditis elegans
WBGene00002153 iars-2 C25A1.7 Caenorhabditis elegans
WBGene00002234 kqt-2 M60.5 Caenorhabditis elegans
WBGene00003124 mai-1 K10B3.9 Caenorhabditis elegans
WBGene00003248 mig-17 F57B7.4 Caenorhabditis elegans
WBGene00003249 mig-18 F11F1.6 Caenorhabditis elegans
WBGene00003402 mpk-2 C04G6.1 Caenorhabditis elegans
WBGene00003430 msp-32 R05F9.3 Caenorhabditis elegans
WBGene00003645 nhr-55 T01G6.7 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule