WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DESeq and EdgeR were used. A threshold of 1.5 log2 fold change and a p value <10 % were applied. let-418: wild-type; let-418(RNAi)-treated embryos; chd-3: chd-3(eh4);controlGFP(RNAi)-treated embryos; chd-3_let-418: chd-3(eh4); let-418(RNAi)-treated embryos. All fold changes are calculated versus wild-type;control(RNAi)-treated embryos. 1h and 3h correspond to the 24- and 100-cell stages, respectively. Description  Transcripts that showed significantly increased expression in 24-cell stage embryo of chd-3(eh4) animals, comparing to in N2 animals, both fed with gfp control RNAi vector.
Primary Identifier  WBPaper00050163:chd-3(eh4)_upregulated_24-cell-embryo
Paste the following link
Lists
This ExpressionCluster isn't in any lists. Upload a list.

0 Anatomy Terms

209 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000430 ceh-5 C16C2.1 Caenorhabditis elegans
WBGene00000439 ceh-16 C13G5.1 Caenorhabditis elegans
WBGene00000493 che-14 F56H1.1 Caenorhabditis elegans
WBGene00000659 col-84 K12D12.3 Caenorhabditis elegans
WBGene00000829 ctb-1 MTCE.21 Caenorhabditis elegans
WBGene00000972 dhs-8 K10H10.3 Caenorhabditis elegans
WBGene00001453 flp-10 T06C10.4 Caenorhabditis elegans
WBGene00001857 hil-6 F59A7.4 Caenorhabditis elegans
WBGene00001877 his-3 T10C6.12 Caenorhabditis elegans
WBGene00001880 his-6 F45F2.13 Caenorhabditis elegans
WBGene00001881 his-7 F45F2.4 Caenorhabditis elegans
WBGene00001885 his-11 ZK131.5 Caenorhabditis elegans
WBGene00001914 his-40 K03A1.1 Caenorhabditis elegans
WBGene00001917 his-43 F08G2.2 Caenorhabditis elegans
WBGene00002601 let-381 F26B1.7 Caenorhabditis elegans
WBGene00003095 lys-6 F58B3.3 Caenorhabditis elegans
WBGene00003245 mig-13 F43C9.4 Caenorhabditis elegans
WBGene00003368 mkk-4 F42G10.2 Caenorhabditis elegans
WBGene00003526 nas-7 C07D10.4 Caenorhabditis elegans
WBGene00003710 nhr-120 C25B8.6 Caenorhabditis elegans
WBGene00003752 nlp-14 D1009.4 Caenorhabditis elegans
WBGene00004092 ppt-1 F44C4.5 Caenorhabditis elegans
WBGene00004197 prx-12 F08B12.2 Caenorhabditis elegans
WBGene00004226 ptr-12 K07A3.2 Caenorhabditis elegans
WBGene00004237 ptr-23 ZK270.1 Caenorhabditis elegans
WBGene00004372 rig-5 C36F7.4 Caenorhabditis elegans
WBGene00004771 sem-2 C32E12.5 Caenorhabditis elegans
WBGene00004822 skr-16 C42D4.6 Caenorhabditis elegans
WBGene00004827 skr-21 K08H2.1 Caenorhabditis elegans
WBGene00005447 srh-240 F37B4.13 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
Levin M, Hashimshony T, Wagner F, Yanai I. Developmental milestones punctuate gene expression in the Caenorhabditis embryo. Dev Cell. 2012 May 15;22(5):1101-8. Epub 2012 May 3. PubMed PMID: 22560298. Supplementary table 1. Fourth cleavage of the AB lineage. Contains 24 cells. 24-cell embryo Ce WBls:0000085

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000482 chd-3 T14G8.1 Caenorhabditis elegans

0 Regulated By Molecule