WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  A Mann-Whitney U test with an empirical background model and FDR correction for multiple testing was used to detect expressed transcripts (Benjamini and Hochberg 1995). Genes and TARs with an FDR <= 0.05 were reported as expressed above background. Authors detected differentially expressed transcripts using a method based on linear models. Genes and TARs were called differentially expressed if the FDR was <= 0.05 and the fold change (FC) >= 2.0. To more strictly correct for potential false-positives resulting from multiple sample comparisons, authors divided individual FDR estimates by the number of samplesor sample comparisons, respectively. This resulted in an adjusted FDR of 1.3 * 0.0001 for expression above background and of 7.4 * 0.0001 for differential expression. Authors called genes selectively enriched in a given tissue if they met the following requirements: (1) enriched expression in a given tissue (FDR <= 0.05 and FC >= 2.0), (2) fold change versus reference among the upper 40% of the positive FC range observed for this gene across all tissues, and (3) fold-change entropy among the lower 40% of the distribution observed for all genes. Description  Genes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at both embryonic and larval stages.
Primary Identifier  WBPaper00037950:GABAergic-motor-neurons_CoreEnriched
Paste the following link
Lists
This ExpressionCluster isn't in any lists. Upload a list.

1 Anatomy Terms

Definition Name Synonym Primary Identifier
neuron that uses GABA as a vesicular neurotransmitter. GABAergic neuron   WBbt:0005190

48 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000048 acr-9 C40C9.2 Caenorhabditis elegans
WBGene00000053 acr-14 T05C12.2 Caenorhabditis elegans
WBGene00000151 apn-1 T05H10.2 Caenorhabditis elegans
WBGene00000280 cah-2 D1022.8 Caenorhabditis elegans
WBGene00000437 ceh-13 R13A5.5 Caenorhabditis elegans
WBGene00000527 cle-1 C36B1.1 Caenorhabditis elegans
WBGene00003106 mab-9 T27A1.6 Caenorhabditis elegans
WBGene00003143 max-1 C34B4.1 Caenorhabditis elegans
WBGene00003859 oig-1 C09E7.3 Caenorhabditis elegans
WBGene00004256 pxn-1 ZK994.3 Caenorhabditis elegans
WBGene00004507 rpy-1 C18H9.7 Caenorhabditis elegans
WBGene00004912 sng-1 T08A9.3 Caenorhabditis elegans
WBGene00005641 sro-1 D1022.6 Caenorhabditis elegans
WBGene00006064 sto-2 F32A6.5 Caenorhabditis elegans
WBGene00006676 twk-23 F19D8.1 Caenorhabditis elegans
WBGene00006762 unc-25 Y37D8A.23 Caenorhabditis elegans
WBGene00006766 unc-30 B0564.10 Caenorhabditis elegans
WBGene00006777 unc-41 C27H6.1 Caenorhabditis elegans
WBGene00006782 unc-46 C04F5.3 Caenorhabditis elegans
WBGene00006783 unc-47 T20G5.6 Caenorhabditis elegans
WBGene00007304 ttr-39 C04G2.1 Caenorhabditis elegans
WBGene00009271 glna-3 F30F8.2 Caenorhabditis elegans
WBGene00009958 madd-4 F53B6.2 Caenorhabditis elegans
WBGene00010871 M05B5.3 M05B5.3 Caenorhabditis elegans
WBGene00011507 T05H10.1 T05H10.1 Caenorhabditis elegans
WBGene00011854 T20B3.14 T20B3.14 Caenorhabditis elegans
WBGene00013416 Y64G10A.7 Y64G10A.7 Caenorhabditis elegans
WBGene00014210 ZK1067.4 ZK1067.4 Caenorhabditis elegans
WBGene00015293 C01C4.3 C01C4.3 Caenorhabditis elegans
WBGene00015444 C04F5.2 C04F5.2 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The whole period of embryogenesis in the nematode Caenorhabditis elegans, from the formation of an egg until hatching. embryo Ce WBls:0000003
  A developmental life stage of the nematode Caenorhabditis elegans that occurs from egg hatching until adulthood. larva Ce WBls:0000023

0 Processes

0 Regulated By Gene

0 Regulated By Molecule