WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Cuffdiff algorithm was used. FPKM >= 1 was used as threshold across all tissues profiled for defining expressed genes. Description  Transcription factors expressed exclusively in intestine, according to mRNA-tagging and RNAseq studies.
Primary Identifier  WBPaper00046338:intestine_unique

1 Anatomy Terms

Definition Name Synonym Primary Identifier
A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages. intestine gut WBbt:0005772

212 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000095 aha-1 C25A1.11 Caenorhabditis elegans
WBGene00000410 cdk-9 H25P06.2 Caenorhabditis elegans
WBGene00000442 ceh-19 F20D12.6 Caenorhabditis elegans
WBGene00000449 ceh-27 F46F3.1 Caenorhabditis elegans
WBGene00000458 ceh-37 C37E2.5 Caenorhabditis elegans
WBGene00000464 ceh-44 Y54F10AM.4 Caenorhabditis elegans
WBGene00000899 daf-3 F25E2.5 Caenorhabditis elegans
WBGene00000904 daf-8 R05D11.1 Caenorhabditis elegans
WBGene00001092 dro-1 F53A2.5 Caenorhabditis elegans
WBGene00001161 efl-1 Y102A5C.18 Caenorhabditis elegans
WBGene00001236 elc-1 Y82E9BR.15 Caenorhabditis elegans
WBGene00001250 elt-2 C33D3.1 Caenorhabditis elegans
WBGene00001251 elt-3 K02B9.4 Caenorhabditis elegans
WBGene00001252 elt-4 C39B10.6 Caenorhabditis elegans
WBGene00001253 elt-6 F52C12.5 Caenorhabditis elegans
WBGene00001345 fos-1 F29G9.4 Caenorhabditis elegans
WBGene00001440 fkh-8 F40H3.4 Caenorhabditis elegans
WBGene00001568 snpc-4 F32H2.1 Caenorhabditis elegans
WBGene00002278 lep-2 Y55F3AM.6 Caenorhabditis elegans
WBGene00003020 lin-35 C32F10.2 Caenorhabditis elegans
WBGene00003026 lin-41 C12C8.3 Caenorhabditis elegans
WBGene00003041 lin-61 R06C7.7 Caenorhabditis elegans
WBGene00003167 mec-3 F01D4.6 Caenorhabditis elegans
WBGene00003233 mgl-2 F45H11.4 Caenorhabditis elegans
WBGene00003480 klf-3 F54H5.4 Caenorhabditis elegans
WBGene00003592 nfi-1 ZK1290.4 Caenorhabditis elegans
WBGene00003602 nhr-3 H01A20.1 Caenorhabditis elegans
WBGene00003603 nhr-4 F32B6.1 Caenorhabditis elegans
WBGene00003604 nhr-5 Y73F8A.21 Caenorhabditis elegans
WBGene00003607 nhr-8 F33D4.1 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  All C. elegans development stages, including embryo, larva and adult stage. all stages Ce WBls:0000002

0 Processes

0 Regulated By Gene

0 Regulated By Molecule