WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 243, fbxb-5-fbxb-106, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:fbxb-5-fbxb-106

0 Anatomy Terms

57 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000200 arx-2 K07C5.1 Caenorhabditis elegans
WBGene00001310 end-1 F58E10.2 Caenorhabditis elegans
WBGene00001891 his-17 K06C4.5 Caenorhabditis elegans
WBGene00005308 srh-87 H27D07.6 Caenorhabditis elegans
WBGene00005569 sri-57 F22E5.16 Caenorhabditis elegans
WBGene00005983 srx-92 F10G2.6 Caenorhabditis elegans
WBGene00006962 xol-1 C18A11.5 Caenorhabditis elegans
WBGene00009510 F37D6.4 F37D6.4 Caenorhabditis elegans
WBGene00010120 dot-1.4 F55G7.2 Caenorhabditis elegans
WBGene00016071 C24H12.1 C24H12.1 Caenorhabditis elegans
WBGene00017083 kin-33 DC2.7 Caenorhabditis elegans
WBGene00017097 E02C12.12 E02C12.12 Caenorhabditis elegans
WBGene00018247 F40G9.12 F40G9.12 Caenorhabditis elegans
WBGene00018709 srsx-8 F52F10.5 Caenorhabditis elegans
WBGene00020473 lips-12 T13B5.6 Caenorhabditis elegans
WBGene00020835 T27A1.3 T27A1.3 Caenorhabditis elegans
WBGene00021053 gadr-4 W06A11.2 Caenorhabditis elegans
WBGene00021180 Y9C9A.13 Y9C9A.13 Caenorhabditis elegans
WBGene00021788 Y51H7C.10 Y51H7C.10 Caenorhabditis elegans
WBGene00022395 ceh-76 Y97E10AM.1 Caenorhabditis elegans
WBGene00022741 ZK430.5 ZK430.5 Caenorhabditis elegans
WBGene00189954 F40G9.18 F40G9.18 Caenorhabditis elegans
WBGene00021668 Y48G1BM.2 Y48G1BM.2 Caenorhabditis elegans
WBGene00013408 fbxb-93 Y63D3A.9 Caenorhabditis elegans
WBGene00008612 fbxa-103 F09C3.4 Caenorhabditis elegans
WBGene00086555 F49B2.7 F49B2.7 Caenorhabditis elegans
WBGene00016077 C24H12.8 C24H12.8 Caenorhabditis elegans
WBGene00016078 C24H12.9 C24H12.9 Caenorhabditis elegans
WBGene00045302 fbxc-30 R07C3.15 Caenorhabditis elegans
WBGene00018457 fbxb-29 F45D11.12 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule