WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DESeq2, Benjamini-Hochberg multiple hypothesis corrected p-value < 0.05 and fold change > 2. Description  Transcripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, comparing to in control animals at L4 larva.
Primary Identifier  WBPaper00050859:upregulated_P-granule(-)_vs_control_L4
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0 Anatomy Terms

8 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000518 ckk-1 C05H8.1 Caenorhabditis elegans
WBGene00010585 K05C4.9 K05C4.9 Caenorhabditis elegans
WBGene00017069 timm-17B.2 D2096.1 Caenorhabditis elegans
WBGene00018878 glit-1 F55D10.3 Caenorhabditis elegans
WBGene00020509 hex-1 T14F9.3 Caenorhabditis elegans
WBGene00012231 W04A4.2 W04A4.2 Caenorhabditis elegans
WBGene00015573 C07G1.7 C07G1.7 Caenorhabditis elegans
WBGene00011608 T08D2.3 T08D2.3 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

4 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001598 glh-1 T21G5.3 Caenorhabditis elegans
WBGene00001601 glh-4 T12F5.3 Caenorhabditis elegans
WBGene00003992 pgl-1 ZK381.4 Caenorhabditis elegans
WBGene00003994 pgl-3 C18G1.4 Caenorhabditis elegans

0 Regulated By Molecule