WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  For each set of mutant data, the repeats were averaged, and a Z test [Z=(observedexpected)\/SE] was performed in Excel. A moderate correction for multiple testing (~17,600 genes) was performed by multiplying the calculated P-value by 10,000. After this correction, all genes with up- or downregulation greater than twofold, P<0.05 in any given mutant were selected. The hypergeometric probability test was used to calculate the significance of overlap of gene groups. Authors determined whether transcripts of Group I-IV genes are bound by GLD-1, based on a minimum criteria of >1.5 enrichment in GLD-1 immunoprecipitated samples compared to control immunoprecipitations (P < 0.01). Description  Genes with higher expression in one or more mutants of efl-1, dpl-1 and lin-35 relative to controls.
Primary Identifier  WBPaper00027758:Group_III

0 Anatomy Terms

42 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000103 akt-2 F28H6.1 Caenorhabditis elegans
WBGene00000503 cht-1 C04F6.3 Caenorhabditis elegans
WBGene00001328 epi-1 K08C7.3 Caenorhabditis elegans
WBGene00001664 gpa-2 F38E1.5 Caenorhabditis elegans
WBGene00001828 hch-1 F40E10.1 Caenorhabditis elegans
WBGene00002015 hsp-16.1 T27E4.8 Caenorhabditis elegans
WBGene00002016 hsp-16.2 Y46H3A.3 Caenorhabditis elegans
WBGene00002020 hsp-16.49 T27E4.9 Caenorhabditis elegans
WBGene00002023 hsp-25 C09B8.6 Caenorhabditis elegans
WBGene00002146 ipp-5 C09B8.1 Caenorhabditis elegans
WBGene00002269 lec-6 Y55B1AR.1 Caenorhabditis elegans
WBGene00003426 msp-19 F36H12.7 Caenorhabditis elegans
WBGene00003558 nca-2 C27F2.2 Caenorhabditis elegans
WBGene00003845 odd-1 B0280.4 Caenorhabditis elegans
WBGene00005241 srh-16 F55C5.9 Caenorhabditis elegans
WBGene00006483 dgk-4 F42A9.1 Caenorhabditis elegans
WBGene00006584 tni-1 F42E11.4 Caenorhabditis elegans
WBGene00006592 dpy-31 R151.5 Caenorhabditis elegans
WBGene00008221 nhr-168 C50B6.8 Caenorhabditis elegans
WBGene00008304 C54D10.10 C54D10.10 Caenorhabditis elegans
WBGene00008911 F17C8.6 F17C8.6 Caenorhabditis elegans
WBGene00009434 F35E12.10 F35E12.10 Caenorhabditis elegans
WBGene00009470 F36D3.4 F36D3.4 Caenorhabditis elegans
WBGene00010184 F57A10.2 F57A10.2 Caenorhabditis elegans
WBGene00010439 JC8.7 JC8.7 Caenorhabditis elegans
WBGene00010440 ttr-51 JC8.8 Caenorhabditis elegans
WBGene00010470 cdr-4 K01D12.11 Caenorhabditis elegans
WBGene00012094 T27E9.2 T27E9.2 Caenorhabditis elegans
WBGene00015592 C08D8.1 C08D8.1 Caenorhabditis elegans
WBGene00016289 lntl-1 C31H1.6 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The stage after an hermaphrodite animal is fully-developed and reaches maturity. adult hermaphrodite Ce WBls:0000057

0 Processes

3 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001061 dpl-1 T23G7.1 Caenorhabditis elegans
WBGene00001161 efl-1 Y102A5C.18 Caenorhabditis elegans
WBGene00003020 lin-35 C32F10.2 Caenorhabditis elegans

0 Regulated By Molecule