WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DEGseq and GFOLD were used to analyze miRNAs expression. Authors chose miRNAs which had more than two-fold difference in expression (P < 0.001, q < 0.01 of Storey) from DEGseq, and miRNAs which had more than two-fold difference in expression (GFOLD score > 0 for up-regulation and GFOLD score < 0 for down-regulation) from GFOLD outcomes. Then authors obtained the intersection of up-regulated miRNAs and down-regulated miRNAs for each stage from the chosen miRNAs, respectively. Description  miRNA with increased expression in prg-1(wm161) L1 larva comparing to in prg-1(wm161) embryo.
Primary Identifier  WBPaper00045316:miRNA_prg-1_L1_vs_embryo_upregulated_adult

0 Anatomy Terms

26 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003039 mir-48 F56A12.3 Caenorhabditis elegans
WBGene00003262 mir-34 Y41G9A.7 Caenorhabditis elegans
WBGene00003299 mir-71 F16A11.4 Caenorhabditis elegans
WBGene00003308 mir-80 K01F9.3 Caenorhabditis elegans
WBGene00003335 mir-241 F56A12.4 Caenorhabditis elegans
WBGene00003339 mir-245 F55D12.7 Caenorhabditis elegans
WBGene00045329 mir-795 F33E2.9 Caenorhabditis elegans
WBGene00045328 mir-794 T07D10.7 Caenorhabditis elegans
WBGene00003300 mir-72 F53G2.9 Caenorhabditis elegans
WBGene00003313 mir-85 F49E12.11 Caenorhabditis elegans
WBGene00003327 mir-234 C13B4.3 Caenorhabditis elegans
WBGene00003331 mir-238 K01F9.5 Caenorhabditis elegans
WBGene00003318 mir-90 K01F9.1 Caenorhabditis elegans
WBGene00003337 mir-243 R08C7.14 Caenorhabditis elegans
WBGene00003325 mir-232 F13H10.7 Caenorhabditis elegans
WBGene00003303 mir-75 T24D8.8 Caenorhabditis elegans
WBGene00003343 mir-249 Y48D7A.3 Caenorhabditis elegans
WBGene00003323 mir-230 F46G11.5 Caenorhabditis elegans
WBGene00045352 mir-791 F13D11.5 Caenorhabditis elegans
WBGene00077721 mir-1022 K10C2.9 Caenorhabditis elegans
WBGene00003330 mir-237 F22F1.4 Caenorhabditis elegans
WBGene00003333 mir-239.2 C34E11.6 Caenorhabditis elegans
WBGene00003332 mir-239.1 C34E11.5 Caenorhabditis elegans
WBGene00045327 mir-793 M03B6.6 Caenorhabditis elegans
WBGene00003275 mir-47 K02B9.5 Caenorhabditis elegans
WBGene00003291 mir-63 C16H3.5 Caenorhabditis elegans

3 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024
  The whole period of embryogenesis in the nematode Caenorhabditis elegans, from the formation of an egg until hatching. embryo Ce WBls:0000003
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

0 Regulated By Gene

0 Regulated By Molecule