WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00087797 Phenotype Remark  sbp-1(RNAi) animals exhibit a clear body phenotype, reduced fat (as determined by Nile Red staining), a decrease in body size, and delayed growth. They also lay fewer eggs compared to control and exhibit an egg-laying defect. Thrashing and pharyngeal pumping were normal.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004735 sbp-1 Y47D3B.7 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47D3B.7 Y47D3B.7 3342   III: 11428418-11428609

0 Laboratories

7 Phenotype

Identifier Name Description
WBPhenotype:0000006 egg laying defective Eggs are not laid, laid at a slower rate or eggs are laid at a later stage of development compared to control.
WBPhenotype:0000031 slow growth Any variation that causes a reduction in growth rate compared to control.
WBPhenotype:0001183 fat content reduced Animals exhibit less fat or lipid than observed in control animals.
WBPhenotype:0000229 small Animals are shorter and thinner than control animals at the same developmental stage.
WBPhenotype:0000007 bag of worms A worm carcass is formed with retained eggs that hatch inside.
WBPhenotype:0001010 clear Animals appear unusually transparent when compared to control.
WBPhenotype:0001905 fewer eggs laid Animals lay fewer total number of eggs over the lifetime of the animal.

2 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000634 pharyngeal pumping variant Any variation in the contraction and relaxation movements of the pharyngeal muscle that mediate feeding in nematodes compared to control.
WBPhenotype:0001700 swimming variant Animals exhibit variations in movement in liquid from that observed for control animals.

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00035503

0 Strain