WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00022901 Phenotype Remark  100% embryonic lethality in the progeny of 7 animals, >80% embryonic lethality in the progeny of 3 animals
Remark  mbk-2 RNAi; exact sequence used to generate dsRNA not specified; coding region of cDNA used for curation Secondary Identifier  [cgc5756]:mbk-2

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003150 mbk-2 F49E11.1 Caenorhabditis elegans

14 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E11.1h F49E11.1h 1608   IV: 13024534-13024618
CDS:F49E11.1e F49E11.1e 1506   IV: 13026421-13026448
CDS:F49E11.1f F49E11.1f 1518   IV: 13027264-13027303
CDS:F49E11.1i F49E11.1i 1572   IV: 13031334-13031382
CDS:F49E11.1d F49E11.1d 1428   IV: 13031644-13031768
CDS:F49E11.1j F49E11.1j 1473   IV: 13031644-13031768
CDS:F49E11.1n F49E11.1n 1410   IV: 13031644-13031768
CDS:F49E11.1a F49E11.1a 1527   IV: 13031334-13031382
CDS:F49E11.1b F49E11.1b 2454   IV: 13009158-13009229
CDS:F49E11.1c F49E11.1c 2391   IV: 13009158-13009229
CDS:F49E11.1g F49E11.1g 2403   IV: 13009158-13009229
CDS:F49E11.1k F49E11.1k 2340   IV: 13009158-13009229
CDS:F49E11.1l F49E11.1l 1545   IV: 13024534-13024618
CDS:F49E11.1m F49E11.1m 1509   IV: 13031334-13031382

1 Laboratories

Primary Identifier
NL

3 Phenotype

Identifier Name Description
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000695 vulva morphology variant Animals exhibit variations in the gross structure or organization of the reproductive organ required for depositing eggs and for influencing male mating behavior compared to control.
WBPhenotype:0000699 vulva development variant Variations in the progression of the egg-laying organ of female and hermaphrodite nematodes over time, from its formation to the mature structure compared to control. In nematodes, the vulva is formed from ventral epidermal cells during larval stages to give rise to a fully formed vulva in the adult.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00005756

0 Strain