WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00079038 Phenotype Remark  E cell daughters fail to migrate to the interior of the embryo during gastrulation
Remark  Exact sequence used for RNAi not stated by authors, spliced coding region sequence of med-1 gene used for curation.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003180 med-1 T24D3.1 Caenorhabditis elegans
WBGene00003181 med-2 K04C2.6 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K04C2.6 K04C2.6 525   III: 6884503-6885027
CDS:T24D3.1 T24D3.1 525   X: 12430609-12431133

1 Laboratories

Primary Identifier
JR

8 Phenotype

Identifier Name Description
WBPhenotype:0001276 ectopic expression transgene Any variation in the cellular expression of a gene product produced by exogenous DNA that has been introduced into the organism such that it now expresses in cells/tissues not seen when compared to the expression of that gene product in control animals.
WBPhenotype:0000354 cell differentiation variant Variations in the processes leading to the specialization of cell. Differentiation impacts diverse cellular properties such as size, shape, polarity, gene expression and responsiveness to signals/cues.
WBPhenotype:0000779 late embryonic arrest Cessation of development during the final stages of embryogenesis. In C. elegans, this stage normally occurs 620-800 min after the first cleavage at 20C and is the stage after elongation.
WBPhenotype:0001495 cell division precocious Cells divide at an earlier stage of development compared to control animals.
WBPhenotype:0001376 transgene expression undetectable cell specific The expression of a gene product produced by DNA coded for by exogenous genetic material that has been introduced into the organism is reduced below the threshold of detection in specific cells.
WBPhenotype:0001637 no Intestine Embryos fail to generate cells that exhibit intestinal specification. In C. elegans, the E blastomere is the precursor of all the intestinal cells.
WBPhenotype:0000393 cell migration failure Characteristic movement of cells from one site to another is abolished compared to control.
WBPhenotype:0001648 no posterior pharynx Embryos fail to generate cells that give rise to the posterior portion of the pharynx. In C. elegans, the MS blastomere- derived pharyngeal cells constitute the posterior portion of the pharynx.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00004636

0 Strain