WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00077086 Genotype  Pscm::WRM-1::GFP
Phenotype Remark  both T cell daughters often produced neural cells, indicating that both daughters adopted the normal fate of T.p Remark  Exact sequence used for RNAi not stated by authors, spliced coding region sequence of gene used for curation. Authors note they used double-stranded RNA of apr-1 spanning the 26353085 bp region of the apr-1 cDNA, but dont specify which cDNA clone.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000156 apr-1 K04G2.8 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K04G2.8c K04G2.8c 2679   I: 8050043-8050225
CDS:K04G2.8b K04G2.8b 3567   I: 8050043-8050225
CDS:K04G2.8a K04G2.8a 3561   I: 8050043-8050225

1 Laboratories

Primary Identifier
HS

3 Phenotype

Identifier Name Description
WBPhenotype:0001585 asymmetric cell division variant Any variation in a cell's ability to divide asymmetrically to produce two daughter cells with different developmental potentials compared to control.
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000828 T lineages variant The descendants of TL or TR cells exhibit altered developmental programs compared to their counterparts in control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00029082

0 Strain