WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00084650 Phenotype Remark  ncbp-2 RNAi results in increased DCR-1 protein levels

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009141 ncbp-2 F26A3.2 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F26A3.2a F26A3.2a 477   I: 7642475-7642491
CDS:F26A3.2b F26A3.2b 276   I: 7642475-7642491
CDS:F26A3.2c F26A3.2c 171   I: 7642475-7642491

1 Laboratories

Primary Identifier
HW

7 Phenotype

Identifier Name Description
WBPhenotype:0000031 slow growth Any variation that causes a reduction in growth rate compared to control.
WBPhenotype:0000062 lethal Animals die prematurely at any stage of the life cycle.
WBPhenotype:0000136 mRNA levels increased Animals exhibit elevated levels of messenger RNA compared to control.
WBPhenotype:0000119 protein expression increased Any change that results in higher than normal levels of protein expression compared to control animals.
WBPhenotype:0001412 alae morphology variant Animals exhibit variations in the organization of the longitudinal ridges on the cuticle along the length of the animal, from that observed for control animals of the same developmental stage.
WBPhenotype:0001779 miRNA expression variant Variations in the biogenesis or stability of the microRNA class of molecules compared to control. In C. elegans these molecules are endogenous single-stranded regulatory molecules, 19-25 nucleotides long, with the potential to arise from hairpin, foldback, structures from their primary transcripts.
WBPhenotype:0000038 exploded through vulva The animal is ruptured at the vulva and displays an extrusion of internal organs at the site of rupture.

1 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000114 mRNA expression variant Variations in the biogenesis and stability of messenger RNA molecules compared to control.

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00036213

0 Strain