WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00110529 Genotype  GFP::LGG-1
Phenotype Remark  Quantification of the number of GFP::LGG-1 puncta reveal that the average number of GFP::LGG-1 puncta was significantly increased, GFP::LGG-1 used as a reporter gene for autophagy as during autophagy GFP::LGG-1 forms fluorescent puncta. Remark  GFP::LGG-1 used as a reporter gene for autophagy as during autophagy GFP::LGG-1 forms fluorescent puncta. To minimize endogenous auto-fluorescence in adult animals, authors restricted their observation of GFP::LGG-1 positive foci to the hypodermal seam cells of L3 larvae.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012644 rabx-5 Y39A1A.5 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A1A.5a Y39A1A.5a 1554   III: 10605370-10605432
CDS:Y39A1A.5b Y39A1A.5b 1563   III: 10605370-10605432

0 Laboratories

2 Phenotype

Identifier Name Description
WBPhenotype:0000306 transgene expression variant Any variation in the characteristic expression of a gene product produced by exogenous DNA that has been introduced into the organism compared to control animals.
WBPhenotype:0002282 autophagy increased Animals exhibit increased levels of the process by which their cells digest parts of their own cytoplasm, compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00038458

0 Strain