WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00110121 Genotype  hsp-60p::GFP
Phenotype Remark  "To examine the function of the putative UPRmtE, transgenic worms expressing GFP via the hsp-60 promoter were employed (Nargund et al., 2012). As expected, ATFS-1 interacted with the multi-copy transgenic promoter during mitochondrial stress as determined by ChIP-seq and ChIP-qPCR (Figures 2B and 2C)." Remark  (Figure 2B,C) spg-7 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004978 spg-7 Y47G6A.10 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47G6A.10 Y47G6A.10 2349   I: 3467134-3467253

0 Laboratories

1 Phenotype

Identifier Name Description
WBPhenotype:0001372 protein DNA interaction variant Variations in the selective and non-covalent physical association between a protein and a specific DNA sequence, compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00046902

0 Strain