WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00061219 Phenotype Remark  slow pharyngeal pumping
Remark  F1 generation assayed

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011481 imp-2 T05E11.5 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05E11.5 T05E11.5 1407   IV: 11117056-11117583

0 Laboratories

14 Phenotype

Identifier Name Description
WBPhenotype:0000154 reduced brood size The characteristic number of offspring produced is lower compared to that of control animals.
WBPhenotype:0000643 locomotion variant Animals exhibit deviations in self-propelled movement on a solid medium compared to control animals.
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000031 slow growth Any variation that causes a reduction in growth rate compared to control.
WBPhenotype:0000583 dumpy Worms are shorter and stouter than control animals at the same developmental stage.
WBPhenotype:0000019 pharyngeal pumping reduced Pharyngeal pumping motion occurs at a slower rate than control animals.
WBPhenotype:0000054 larval lethal The animal dies at any time between hatching and onset to adulthood.
WBPhenotype:0000038 exploded through vulva The animal is ruptured at the vulva and displays an extrusion of internal organs at the site of rupture.
WBPhenotype:0000229 small Animals are shorter and thinner than control animals at the same developmental stage.
WBPhenotype:0000638 molt defect Animals exhibit defects in the process of periodic shedding, of part or all of its cuticle, during cuticle replacement that punctuates each larval stage.
WBPhenotype:0000948 cuticle morphology variant Any variation in the appearance or structure of the rigid external coating which is secreted by the hypodermis, seam and some interfacial epithelial cells compared to control (Wormatlas).
WBPhenotype:0000475 muscle detached Animals fail to establish or maintain the connection between cell(s) whose principal function is to provide contractile forces and its neighboring cells or tissues.
WBPhenotype:0001046 pharyngeal muscle morphology variant Any variations associated with the characteristic morphology of the pharyngeal muscle such as shape, birefringence etc compared to control.
WBPhenotype:0000212 body constriction Animals contain body regions that are more narrow or drawn together than adjacent body regions.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00024460

1 Strain

WormBase ID
WBStrain00000001