WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00082858 Phenotype Remark  COL-19::GFP is retained in small vesicles (arrowed) and is not incorporated into the cuticle of F1 adults.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00014218 prp-40 ZK1098.1 Caenorhabditis elegans
WBGene00014222 trpp-3 ZK1098.5 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK1098.5 ZK1098.5 546   III: 9525552-9525593

1 Laboratories

Primary Identifier
TP

5 Phenotype

Identifier Name Description
WBPhenotype:0001410 protein expression absent Animals fail to express a given protein or class of proteins.
WBPhenotype:0001517 annulae morphology variant Animals exhibit variations in the circumferential pattern of ridges in the outer cortical layer of the cuticle, compared to that observed in control animals of the same developmental stage.
WBPhenotype:0000436 protein subcellular localization variant Any variation in the placement of a protein within in a cell or cellular compartment compared to control.
WBPhenotype:0000229 small Animals are shorter and thinner than control animals at the same developmental stage.
WBPhenotype:0001228 alae absent Animals lack the small linear ridges running along the lateral lines of the cuticle, lengthwise along the body (Wormatlas).

1 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000583 dumpy Worms are shorter and stouter than control animals at the same developmental stage.

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00005747

1 Strain

WormBase ID
WBStrain00034928