WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00092445 Phenotype Remark  fbf-2 RNAi resulted in animals with small germ lines and abnormal oocytes
Remark  (Figure 4) fbf-2 RNAi

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001401 fbf-1 H12I13.4 Caenorhabditis elegans
WBGene00001402 fbf-2 F21H12.5 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H12I13.4 H12I13.4 1845   II: 6078550-6078748
CDS:F21H12.5 F21H12.5 1899   II: 6089142-6089388

1 Laboratories

Primary Identifier
MW

5 Phenotype

Identifier Name Description
WBPhenotype:0000385 sperm excess Animals produce an increased sperm population compared to control.
WBPhenotype:0000683 masculinization of germline The germ line is sexually transformed from hermaphrodite to male. In C. elegans, XX mog animals are somatically hermaphrodite, but germ cells that normally would become oocytes are transformed into sperm.
WBPhenotype:0001260 oocyte morphology variant Haploid female germ cells (oocytes) exhibit variations in their overall structure, appearance or contents compared to control.
WBPhenotype:0000291 no oocytes Hermaphrodites lack fully specialized female gametes that are competent for fertilization.
WBPhenotype:0000812 germ cell development variant Variations in the progression of the immature germ cell over time, from its formation from precursors to the mature structure (gamete) compared to control.

4 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000643 locomotion variant Animals exhibit deviations in self-propelled movement on a solid medium compared to control animals.
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000520 morphology phenotype Animals exhibit variations in the form, structure or composition of any of its parts compared to control animals.
WBPhenotype:0000414 cell fate transformation The cell takes on a different identity from which it was initially committed.

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00002949

0 Strain