WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00090757 Phenotype Remark  Embryos would die later in embryogenesis displaying elongation and morphogenetic defects.
Remark  Exact sequence used for RNAi not stated by authors, spliced coding region sequence of gene used for curation (C01H6.5a)

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003622 nhr-23 C01H6.5 Caenorhabditis elegans

6 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C01H6.5a C01H6.5a 1767   I: 7216962-7217029
CDS:C01H6.5f C01H6.5f 1668   I: 7218823-7219177
CDS:C01H6.5b C01H6.5b 1662   I: 7218823-7219177
CDS:C01H6.5c C01H6.5c 1314   I: 7214967-7214973
CDS:C01H6.5d C01H6.5d 1320   I: 7214967-7214973
CDS:C01H6.5e C01H6.5e 1086   I: 7219631-7219696

1 Laboratories

Primary Identifier
KM

11 Phenotype

Identifier Name Description
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000691 gonad development variant Variations in the progression of the organ that produces gametes over time, from its formation to the mature structure compared to control.
WBPhenotype:0000031 slow growth Any variation that causes a reduction in growth rate compared to control.
WBPhenotype:0000583 dumpy Worms are shorter and stouter than control animals at the same developmental stage.
WBPhenotype:0000229 small Animals are shorter and thinner than control animals at the same developmental stage.
WBPhenotype:0000638 molt defect Animals exhibit defects in the process of periodic shedding, of part or all of its cuticle, during cuticle replacement that punctuates each larval stage.
WBPhenotype:0000083 L3 arrest The developmental program of the animals does not continue past the third larval stage (L3).
WBPhenotype:0000084 L4 arrest The developmental program of the animals does not continue past the fourth larval stage (L4).
WBPhenotype:0001836 eggshell morphology variant Any variation in the overall structure or appearance of the protective barrier which isolates the embryo from the external environment, compared to control .
WBPhenotype:0000079 branched adult alae The small linear ridges running along the lateral lines of the cuticle of adults are branched as opposed to having an unbiforcated arrangement, lengthwise along the body (Wormatlas).
WBPhenotype:0000078 seam cells stacked The hypodermal cells, which lie along the lateral body wall to form longitudinal stripes of epithelial cells underlying the alae, are misplaced such that they are stacked along the dorsal-ventral axis rather than forming a continuous row of adjacent cells .

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00003081

0 Strain