WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00075666 Phenotype Remark  at about the 100 cell stage, with cells unorganized

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004980 spk-1 B0464.5 Caenorhabditis elegans

4 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0464.5d B0464.5d 1860   III: 9459213-9459215
CDS:B0464.5a B0464.5a 3012   III: 9457984-9459023
CDS:B0464.5b B0464.5b 2097   III: 9456642-9456716
CDS:B0464.5c B0464.5c 2325   III: 9456642-9456716

0 Laboratories

4 Phenotype

Identifier Name Description
WBPhenotype:0000823 germline proliferation variant Nuclear divisions in the germ line are either expanded are reduced compared to control.
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0001036 sterile F1 Any variation that compromises the reproductive ability of an F1 generation animal.
WBPhenotype:0000774 gametogenesis variant Any variation in the processes that govern the generation and maintenance of gametes compared to control.

3 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000695 vulva morphology variant Animals exhibit variations in the gross structure or organization of the reproductive organ required for depositing eggs and for influencing male mating behavior compared to control.
WBPhenotype:0000289 uterus morphology variant Any variation in the form, structure or composition of the portion of the somatic gonad which encloses the fertilized eggs after their passage through the spermatheca compared to control (Wormatlas).
WBPhenotype:0001659 spermatheca morphology variant Any variation in the form, structure or composition of the somatic gonad structure that connects the distal gonad arm to the uterus compared to control (Wormatlas).

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00004476

1 Strain

WormBase ID
WBStrain00000001