WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00090860 Genotype  unc-119(ed3) III; cbgIs91[pPept-1:pept-1::DsRed;unc-119(+)]; cbgIs98[pPept-1:GFP::rab-11.1;unc-119(+)]
Phenotype Remark  PEPT-1::DsRED accumulated in fuzzy or irregularly shaped structures; GFP::RAB-11 recycling endosome (RE) morphology appears diffuse or GFP::RAB-11 is cytosolically distributed; Autofluorescent lysosome-related organelles (AF/LROs) are enlarged or accumulated; Autofluorescent lysosome-related organelles (AF/LROs) appear diffuse Remark  (Table S1) Y42G9A.4 RNAi
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021534 mvk-1 Y42G9A.4 Caenorhabditis elegans

16 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y42G9A.4a Y42G9A.4a 1824   III: 6124845-6125020
CDS:Y42G9A.4b Y42G9A.4b 1845   III: 6124845-6125020
CDS:Y42G9A.4c Y42G9A.4c 1455   III: 6124845-6125020
CDS:Y42G9A.4m Y42G9A.4m 2124   III: 6124845-6125020
CDS:Y42G9A.4o Y42G9A.4o 1518   III: 6124845-6125020
CDS:Y42G9A.4p Y42G9A.4p 1734   III: 6124845-6125020
CDS:Y42G9A.4l Y42G9A.4l 1908   III: 6124845-6125020
CDS:Y42G9A.4h Y42G9A.4h 1608   III: 6124845-6125020
CDS:Y42G9A.4d Y42G9A.4d 1545   III: 6124845-6125020
CDS:Y42G9A.4e Y42G9A.4e 2214   III: 6124845-6125020
CDS:Y42G9A.4f Y42G9A.4f 1887   III: 6124845-6125020
CDS:Y42G9A.4g Y42G9A.4g 1935   III: 6124845-6125020
CDS:Y42G9A.4i Y42G9A.4i 2151   III: 6124845-6125020
CDS:Y42G9A.4j Y42G9A.4j 1872   III: 6124845-6125020
CDS:Y42G9A.4k Y42G9A.4k 2187   III: 6124845-6125020
CDS:Y42G9A.4n Y42G9A.4n 1797   III: 6124845-6125020

1 Laboratories

Primary Identifier
MZE

3 Phenotype

Identifier Name Description
WBPhenotype:0000679 transgene subcellular localization variant Any variation in the subcellular localization of a gene product produced by DNA coded for by exogenous genetic material that has been introduced into the organism compared to its expression in control animals.
WBPhenotype:0002094 RAB-11 recycling endosome morphology variant Any variation in the form or composition of membrane bound organelles, known as recycling endosomes, positive for the RAB protein RAB-11, that traffic material from early endosomes back to the plasma membrane of the cell, thereby recycling recently endocytosed material to be reused at the plasma membrane.
WBPhenotype:0002095 lysosome-related organelle morphology variant Any variation in the form or composition of membrane bound organelles, known as lysosome-related organelles (LROs) that, like lysosomes, have an acidic interior and generally act to digest components of the cell but are distinct in function, composition, and morphology, compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00041129

0 Strain