WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00100922 Genotype  rrf-3(pk1426); him-8(e1489)
Remark  (Table S2) ajm-1 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000100 ajm-1 C25A11.4 Caenorhabditis elegans

13 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C25A11.4d C25A11.4d 5595   X: 9082983-9083084
CDS:C25A11.4b C25A11.4b 3882   X: 9082983-9083084
CDS:C25A11.4f C25A11.4f 5718   X: 9082983-9083084
CDS:C25A11.4l C25A11.4l 4710   X: 9094746-9094808
CDS:C25A11.4g C25A11.4g 4464   X: 9097447-9097454
CDS:C25A11.4a C25A11.4a 4443   X: 9098346-9098640
CDS:C25A11.4h C25A11.4h 4140   X: 9100259-9100369
CDS:C25A11.4j C25A11.4j 3831   X: 9104692-9104736
CDS:C25A11.4c C25A11.4c 4722   X: 9082983-9083084
CDS:C25A11.4e C25A11.4e 3534   X: 9105515-9106296
CDS:C25A11.4i C25A11.4i 3903   X: 9103762-9103809
CDS:C25A11.4k C25A11.4k 4935   X: 9092285-9092572
CDS:C25A11.4m C25A11.4m 4578   X: 9095145-9095146

1 Laboratories

Primary Identifier
DZ

0 Phenotype

1 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0002188 male somatic gonad development variant Any variation in the progression of the components of the male gonad that are separate from the germline proper over time, from its formation to its mature structure compared to control. In C. elegans, the male somatic gonad consists of three tissues: distal tip cells (DTCs), the seminal vesicle, and the vas deferens (Wormatlas).

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00036019

0 Strain