WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00110636 Phenotype Remark  RNAi decreased the leaving rate per minute. RNAi decreased the leaving rate CB4856 (Hawaii) but not N2 strain.
Remark  In this paper they did RNAi in both N2 (Bristol) and the natural isolate CB4856 (Hawaii or HW), and as expected based on SNP differences, authors saw different results in each background.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015492 lnp-1 C05E11.1 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C05E11.1b C05E11.1b 1041   X: 4588768-4588869
CDS:C05E11.1a C05E11.1a 1029   X: 4588768-4588869

0 Laboratories

1 Phenotype

Identifier Name Description
WBPhenotype:0001983 lawn leaving behavior variant Variation of the time an individual spent on a patch of food (bacterial lawn) before leaving, compared to control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00048834

1 Strain

WormBase ID
WBStrain00004602