WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023922 Gene Name  Cbr-suf-1
Sequence Name  ? CBG00546 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in RNA processing. Predicted to be located in nucleus. Is an ortholog of C. elegans suf-1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG00546.1 CBG00546.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG00546 CBG00546   [unknown]

0 RNAi Result

5 Allele

Public Name
WBVar00135585
WBVar00063308
WBVar00063313
WBVar00063318
WBVar00063303

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-suf-1, ATTCGGATGAGGAGGACGAGTATTCACATCTTCAAAGCAGCACAATAGGATCTATCGGAT, WBGene00023922   Expr1054065 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  involved_in
  located_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term