WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00024619 Gene Name  Cbr-lipl-5
Sequence Name  ? CBG01370 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable hydrolase activity, acting on ester bonds. Predicted to be involved in lipid metabolic process. Is an ortholog of C. elegans lipl-5. In C. elegans, lipl-5 is involved in defense response to Gram-negative bacterium; lipid homeostasis; and triglyceride catabolic process. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG01370.1 CBG01370.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG01370 CBG01370   [unknown]

0 RNAi Result

4 Allele

Public Name
WBVar00034404
WBVar00034399
WBVar00034389
WBVar00034394

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG01370, GACTACGTGCGCCACAGGACATTTATCATCCAGCAGTGGAGCTTTGTACAAATGATTATT, WBGene00024619   Expr1067736 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term