WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025132 Gene Name  CBG01975
Sequence Name  ? CBG01975 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable glutamate synthase (NADH) activity and small molecule binding activity. Predicted to be involved in glutamate biosynthetic process. Is an ortholog of C. elegans W07E11.1. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG01975a.1 CBG01975a.1   [unknown]
Transcript:CBG01975b.1 CBG01975b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG01975a CBG01975a   [unknown]
CDS:CBG01975b CBG01975b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  C.briggsae proteins that showed significantly decreased at L1 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L1_vs_embryo_downregulated
  C.briggsae proteins that showed significantly decreased at L4 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L4_vs_embryo_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG01975, CATCGAGCAGCTCAACTTGAAGACTGACCCAAGATCCAACATTCTCACTCCAAAGGACAA, WBGene00025132   Expr1068072 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

10 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  enables
  enables
  enables
  enables
  enables
  enables

0 Homologues

0 Locations

10 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  enables
  enables
  enables
  enables
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term