WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025188 Gene Name  Cbr-cgef-1
Sequence Name  ? CBG02046 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable guanyl-nucleotide exchange factor activity. Is an ortholog of C. elegans cgef-1. In C. elegans, cgef-1 is involved in protein localization. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG02046c.1 CBG02046c.1   [unknown]
Transcript:CBG02046d.1 CBG02046d.1   [unknown]
Transcript:CBG02046b.1 CBG02046b.1   [unknown]
Transcript:CBG02046a.1 CBG02046a.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG02046d CBG02046d   [unknown]
CDS:CBG02046a CBG02046a   [unknown]
CDS:CBG02046b CBG02046b   [unknown]
CDS:CBG02046c CBG02046c   [unknown]

0 RNAi Result

16 Allele

Public Name
WBVar00106952
WBVar00106953
WBVar00106950
WBVar00106951
WBVar00106949
WBVar00054294
WBVar00022494
WBVar00022464
WBVar00022499
WBVar00022469
WBVar00022504
WBVar00022474
WBVar00022509
WBVar00022479
WBVar00022484
WBVar00022489

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-cgef-1, ACCACACCACTTCGAACAGCCGAAATCAACAACGAGGTGGAGCTTGTCGACAGCTGCTAA, WBGene00025188   Expr1061776 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG02049, ACAATGGACGTTGGTGGCCTCATAAAGTACAACCACTTGGAATGGGTGCAACATAGAATG, WBGene00025191   Expr1051497 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term