WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025607 Gene Name  Cbr-abts-3
Sequence Name  ? CBG02581 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable solute:inorganic anion antiporter activity. Predicted to be involved in monoatomic anion transport. Predicted to be located in membrane. Is an ortholog of C. elegans abts-3. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG02581a.1 CBG02581a.1   [unknown]
Transcript:CBG02581b.1 CBG02581b.1   [unknown]
Transcript:CBG02581d.1 CBG02581d.1   [unknown]
Transcript:CBG02581c.1 CBG02581c.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG02581b CBG02581b   [unknown]
CDS:CBG02581c CBG02581c   [unknown]
CDS:CBG02581a CBG02581a   [unknown]
CDS:CBG02581d CBG02581d   [unknown]

0 RNAi Result

28 Allele

Public Name
WBVar00107503
WBVar00107502
WBVar00107501
WBVar00107500
WBVar00107514
WBVar00107513
WBVar00107512
WBVar00107511
WBVar00107510
WBVar00107509
WBVar00107508
WBVar00107507
WBVar00107506
WBVar00107505
WBVar00107504
WBVar00107516
WBVar00107515
WBVar00107489
WBVar00107495
WBVar00107494
WBVar00107493
WBVar00107492
WBVar00107491
WBVar00107490
WBVar00107499
WBVar00107498
WBVar00107497
WBVar00107496

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-abts-3, CAAAAACTCTTCTCAACGGTGGTATTCTTGTATTTTGCGTGTCTTCTTCCAGCAATTGCA, WBGene00025607   Expr1068853 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG02579, CTGTACGAAGAACGAGTACGTCGTCCAGTTGTAAGATGGCAGAGTATGAAAGAAGATGGA, WBGene00025606   Expr1069421 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  located_in
  enables
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  located_in
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term