WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00026399 Gene Name  CBG03556
Sequence Name  ? CBG03556 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable metalloendopeptidase activity. Predicted to be involved in cell adhesion and proteolysis. Predicted to be located in membrane. Is an ortholog of C. elegans Y43F4A.1. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG03556b.1 CBG03556b.1   [unknown]
Transcript:CBG03556a.1 CBG03556a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG03556a CBG03556a   [unknown]
CDS:CBG03556b CBG03556b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG03556, AAAAGTGGTTGATGGTTGGCTGAGAGAAGGATCTTTAATCTGCCCAAAGTGCTCGGATTA, WBGene00026399   Expr1052388 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  located_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term