WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00027355 Gene Name  Cbr-nep-21
Sequence Name  ? CBG04739 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable metalloendopeptidase activity. Predicted to be involved in proteolysis. Is an ortholog of C. elegans nep-21. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG04739a.1 CBG04739a.1   [unknown]
Transcript:CBG04739b.1 CBG04739b.1   [unknown]
Transcript:CBG04739c.1 CBG04739c.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG04739c CBG04739c   [unknown]
CDS:CBG04739b CBG04739b   [unknown]
CDS:CBG04739a CBG04739a   [unknown]

0 RNAi Result

20 Allele

Public Name
WBVar00136304
WBVar00109637
WBVar00109636
WBVar00109639
WBVar00109638
WBVar00109640
WBVar00109641
WBVar00109642
WBVar00109643
WBVar00109644
WBVar00109645
WBVar00109646
WBVar00109647
WBVar00109648
WBVar00109650
WBVar00109651
WBVar00109649
WBVar00109635
WBVar00020649
WBVar00020654

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG04739, GAATTCGCGAAAGCGTTCCAATGCCCCATTGGATCTCCAATGAATCCAGAGAGAAAGTGC, WBGene00027355   Expr1052754 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG04738, AATTTCCACGTGTCAGCGTCCAATCGAGACATGCTCATCTACCTCATCATTTATCAATAA, WBGene00027354   Expr1067993 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term