WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00028127 Gene Name  Cbr-jnk-1
Sequence Name  ? CBG05733 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity and MAP kinase activity. Is an ortholog of C. elegans jnk-1. In C. elegans, jnk-1 is involved in several processes, including determination of adult lifespan; negative regulation of cellular response to manganese ion; and response to stress. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG05733b.1 CBG05733b.1   [unknown]
Transcript:CBG05733a.1 CBG05733a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG05733b CBG05733b   [unknown]
CDS:CBG05733a CBG05733a   [unknown]

0 RNAi Result

3 Allele

Public Name
WBVar00136437
WBVar00136439
WBVar00136438

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-jnk-1, AATATGGATGTAGAACAAAACGTGGATTCGTGGAGAGAGCACATCTTCAGAGAGCTGACT, WBGene00028127   Expr1052736 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term