WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00028452 Gene Name  Cbr-srgp-1
Sequence Name  ? CBG06126 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in signal transduction. Is an ortholog of C. elegans srgp-1. In C. elegans, srgp-1 is involved in negative regulation of cell migration; negative regulation of phagocytosis, engulfment; and regulation of cell-cell adhesion. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG06126a.1 CBG06126a.1   [unknown]
Transcript:CBG06126b.1 CBG06126b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG06126b CBG06126b   [unknown]
CDS:CBG06126a CBG06126a   [unknown]

0 RNAi Result

5 Allele

Public Name
WBVar00006222
WBVar00111271
WBVar00111272
WBVar00111270
WBVar00111273

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-srgp-1, AATCGCCCACTCTGGATGATATTCTGAATTCATTGAAAGTTGCAACCAGTATCAGTCCAT, WBGene00028452   Expr1060282 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  involved_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term