WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00031318 Gene Name  Cbr-mua-3
Sequence Name  ? CBG09798 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable calcium ion binding activity. Is an ortholog of C. elegans mua-3. In C. elegans, mua-3 is involved in cell-matrix adhesion. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG09798c.1 CBG09798c.1   [unknown]
Transcript:CBG09798a.1 CBG09798a.1   [unknown]
Transcript:CBG09798b.1 CBG09798b.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG09798c CBG09798c   [unknown]
CDS:CBG09798a CBG09798a   [unknown]
CDS:CBG09798b CBG09798b   [unknown]

0 RNAi Result

39 Allele

Public Name
WBVar00115307
WBVar00115308
WBVar00115309
WBVar00115303
WBVar00115304
WBVar00115305
WBVar00115306
WBVar00115310
WBVar00115311
WBVar00115312
WBVar00115313
WBVar00115300
WBVar00115301
WBVar00115302
WBVar00115314
WBVar00115315
WBVar00115316
WBVar00115317
WBVar00115279
WBVar00115291
WBVar00115292
WBVar00115293
WBVar00115294
WBVar00115290
WBVar00115299
WBVar00115295
WBVar00115296
WBVar00115297
WBVar00115298
WBVar00115280

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-mua-3, GTACACTTGCAAGTGTCCAGAAGGATACATCGATGGAAATCCAGACGAGCCAGGAAGAGT, WBGene00031318   Expr1061943 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term