WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00031543 Gene Name  Cbr-trpp-3
Sequence Name  ? CBG10062 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in Golgi vesicle transport. Predicted to be part of TRAPP complex. Is an ortholog of C. elegans trpp-3. In C. elegans, trpp-3 is involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle and protein secretion. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG10062.1 CBG10062.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG10062 CBG10062   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG10062, ATTCAGGAGCCAACACGGAAATCAGAATTCGTTTCGATCAGGTGCTGAAGGACAGTTTAC, WBGene00031543   Expr1060670 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  involved_in
  part_of

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term