WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00031587 Gene Name  Cbr-emb-9
Sequence Name  ? CBG10116 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be an extracellular matrix structural constituent. Predicted to be part of collagen trimer. Is an ortholog of C. elegans emb-9. In C. elegans, emb-9 is involved in several processes, including positive regulation of axon regeneration; positive regulation of protein secretion; and response to serotonin. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG10116b.1 CBG10116b.1   [unknown]
Transcript:CBG10116a.1 CBG10116a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG10116b CBG10116b   [unknown]
CDS:CBG10116a CBG10116a   [unknown]

0 RNAi Result

4 Allele

Public Name
WBVar00011227
WBVar00011222
WBVar00011217
WBVar00011212

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-emb-9, GCAAACCAATGTCACAAACACTCAAGGCCGGAGGACTCAAAGATCGTGTGTCCAGATGCC, WBGene00031587   Expr1058548 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  part_of

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term