WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032841 Gene Name  Cbr-wht-5
Sequence Name  ? CBG11767 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ABC-type transporter activity; ATP binding activity; and ATP hydrolysis activity. Predicted to be located in membrane. Is an ortholog of C. elegans wht-5. In C. elegans, wht-5 is involved in positive regulation of nematode male tail tip morphogenesis. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11767a.1 CBG11767a.1   [unknown]
Transcript:CBG11767b.1 CBG11767b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11767b CBG11767b   [unknown]
CDS:CBG11767a CBG11767a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-wht-5, TATTGTAGCTGCTCTTTTGTTCTGGAAGATTCTTGGGATTCTATCGTTTAGCTGGAGAAT, WBGene00032841   Expr1064869 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  located_in
  enables

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  located_in
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term