WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00033042 Gene Name  Cbr-smp-2
Sequence Name  ? CBG12028 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable semaphorin receptor binding activity. Is an ortholog of C. elegans smp-2. In C. elegans, smp-2 is involved in nematode male tail mating organ morphogenesis. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG12028a.1 CBG12028a.1   [unknown]
Transcript:CBG12028b.1 CBG12028b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG12028b CBG12028b   [unknown]
CDS:CBG12028a CBG12028a   [unknown]

0 RNAi Result

3 Allele

Public Name
WBVar00118145
WBVar00118147
WBVar00118146

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-smp-2, GAAGTGCTCTTCTTCTTTTCTGAATCTCCAATGGAAACCGAAGGATGTGGTCTACACAAA, WBGene00033042   Expr1067174 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term