WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00033539 Gene Name  Cbr-ncbp-1
Sequence Name  ? CBG12621 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable RNA cap binding activity. Predicted to be involved in RNA metabolic process and mRNA export from nucleus. Predicted to be part of nuclear cap binding activity complex. Is an ortholog of C. elegans ncbp-1. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG12621.1 CBG12621.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG12621 CBG12621   [unknown]

0 RNAi Result

3 Allele

Public Name
WBVar00118732
WBVar00118731
WBVar00118730

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-ncbp-1, GCCTTGCCATCAGATTTCGTCAAAATTCACCCAGCGTCTCCAGAAATCAGATATCTACTC, WBGene00033539   Expr1055238 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in
  part_of

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term