WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00035265 Gene Name  Cbr-ostd-1
Sequence Name  ? CBG14887 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in protein N-linked glycosylation. Predicted to be located in membrane. Predicted to be part of oligosaccharyltransferase complex. Is an ortholog of C. elegans ostd-1. In C. elegans, ostd-1 is involved in endoplasmic reticulum organization and regulation of cell division. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG14887.1 CBG14887.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG14887 CBG14887   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  C.briggsae proteins that showed significantly decreased at L1 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L1_vs_embryo_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-ostd-1, AATTGGAATCAACTTACAAAACGCTCCAGCCTCTGCATTCGTTCCAATCTTCCATATTGG, WBGene00035265   Expr1056715 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  involved_in
  located_in
  part_of

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  located_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term