WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00035945 Gene Name  Cbr-vab-10
Sequence Name  ? CBG15813 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable microtubule binding activity. Predicted to be involved in intermediate filament cytoskeleton organization. Predicted to be located in cytoskeleton. Is an ortholog of C. elegans vab-10. In C. elegans, vab-10 is involved in epidermis morphogenesis. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

16 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG15813p.1 CBG15813p.1   [unknown]
Transcript:CBG15813c.1 CBG15813c.1   [unknown]
Transcript:CBG15813d.1 CBG15813d.1   [unknown]
Transcript:CBG15813e.1 CBG15813e.1   [unknown]
Transcript:CBG15813f.1 CBG15813f.1   [unknown]
Transcript:CBG15813g.1 CBG15813g.1   [unknown]
Transcript:CBG15813a.1 CBG15813a.1   [unknown]
Transcript:CBG15813b.1 CBG15813b.1   [unknown]
Transcript:CBG15813l.1 CBG15813l.1   [unknown]
Transcript:CBG15813m.1 CBG15813m.1   [unknown]
Transcript:CBG15813n.1 CBG15813n.1   [unknown]
Transcript:CBG15813o.1 CBG15813o.1   [unknown]
Transcript:CBG15813h.1 CBG15813h.1   [unknown]
Transcript:CBG15813i.1 CBG15813i.1   [unknown]
Transcript:CBG15813j.1 CBG15813j.1   [unknown]
Transcript:CBG15813k.1 CBG15813k.1   [unknown]
 

Other

16 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG15813l CBG15813l   [unknown]
CDS:CBG15813m CBG15813m   [unknown]
CDS:CBG15813j CBG15813j   [unknown]
CDS:CBG15813k CBG15813k   [unknown]
CDS:CBG15813h CBG15813h   [unknown]
CDS:CBG15813i CBG15813i   [unknown]
CDS:CBG15813f CBG15813f   [unknown]
CDS:CBG15813g CBG15813g   [unknown]
CDS:CBG15813d CBG15813d   [unknown]
CDS:CBG15813e CBG15813e   [unknown]
CDS:CBG15813b CBG15813b   [unknown]
CDS:CBG15813c CBG15813c   [unknown]
CDS:CBG15813a CBG15813a   [unknown]
CDS:CBG15813p CBG15813p   [unknown]
CDS:CBG15813n CBG15813n   [unknown]
CDS:CBG15813o CBG15813o   [unknown]

0 RNAi Result

52 Allele

Public Name
WBVar00039257
WBVar00039252
WBVar00019402
WBVar00019297
WBVar00123150
WBVar00123152
WBVar00123151
WBVar00123154
WBVar00123153
WBVar00123156
WBVar00123155
WBVar00123149
WBVar00123148
WBVar00123170
WBVar00123172
WBVar00123171
WBVar00123174
WBVar00123173
WBVar00123176
WBVar00123175
WBVar00123178
WBVar00123177
WBVar00123169
WBVar00123168
WBVar00123161
WBVar00123160
WBVar00123163
WBVar00123162
WBVar00123165
WBVar00123164

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_upregulated

5 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG15811, AGAAGACGTGCAGCTGCTGTCAACCGTATCAAATTGAGAAGATCTCCGAGAATCACTATC, WBGene00035943   Expr1067408 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-vab-10, ACAAAGAGGGTGGAGAGTTCATTCATAAGGCCAAGATGTTCGATGCGAAACTCGGACAGT, WBGene00035945   Expr1064785 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG15814, GCCACAACGCTAACCATGCTGAAAGTGGTGCGAAGCTATTCGAAGAAGGCCGAGCGGAAG, WBGene00035946   Expr1057540 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG15812, ACACCCGAACCATCAATTGGCACGGACAACCATCAGAACTCAGAAATTCCAAAACCGACC, WBGene00035944   Expr1065060 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG15817, CGACGGGTCCAAGCACCGACAACCGCAGTAGTGACAATGGTTCGAAAAACGCAAAGTCTT, WBGene00035948   Expr1051114 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term