WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00036743 Gene Name  Cbr-lim-9
Sequence Name  ? CBG16954 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable zinc ion binding activity. Is an ortholog of C. elegans lim-9. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG16954a.1 CBG16954a.1   [unknown]
Transcript:CBG16954c.1 CBG16954c.1   [unknown]
Transcript:CBG16954b.1 CBG16954b.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG16954c CBG16954c   [unknown]
CDS:CBG16954b CBG16954b   [unknown]
CDS:CBG16954a CBG16954a   [unknown]

0 RNAi Result

29 Allele

Public Name
WBVar00138419
WBVar00138420
WBVar00138422
WBVar00138421
WBVar00138424
WBVar00138423
WBVar00001869
WBVar00001879
WBVar00001874
WBVar00124413
WBVar00124414
WBVar00124411
WBVar00124412
WBVar00124415
WBVar00124410
WBVar00124408
WBVar00124409
WBVar00028794
WBVar00028799
WBVar00028804
WBVar00021767
WBVar00028809
WBVar00021772
WBVar00021777
WBVar00021782
WBVar00021787
WBVar00028779
WBVar00028784
WBVar00028789

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

4 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG16951, CAACTCGAATGATCATAATAACTCGAATCATCGAATGGTCATTGAGGATGTCACTGATGA, WBGene00036741   Expr1067429 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG16953, ACGGATACCTAGTGGAAAAGGAACATCAAATCAGACGCCAGGAGTGGTGAAGACGGATTT, WBGene00036742   Expr1067193 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG16950, TCTATGCTCGTGTTATTCGAAAAATACAGAAGTTGTGGAAGTTTACGAAGGAGACAATGG, WBGene00036740   Expr1054060 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-lim-9, ACAGTGACCACTTTTGCTGTTGGCAATGCGATCAAACATTGACTGGACAGCGATATATAA, WBGene00036743   Expr1063677 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term