WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038369 Gene Name  Cbr-cpsf-2
Sequence Name  ? CBG19097 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable RNA binding activity. Predicted to be involved in mRNA 3'-end processing by stem-loop binding activity and cleavage. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Is an ortholog of C. elegans cpsf-2. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19097a.1 CBG19097a.1   [unknown]
Transcript:CBG19097a.2 CBG19097a.2   [unknown]
Transcript:CBG19097b.1 CBG19097b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19097a CBG19097a   [unknown]
CDS:CBG19097b CBG19097b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-cpsf-2, GAATATCTGATGGAGAATCGACTAAGAAAATGCTCGCTGGTCTGATGCCTCGCCAAATCA, WBGene00038369   Expr1062872 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  part_of

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term