WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038954 Gene Name  CBG19790
Sequence Name  ? CBG19790 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable guanyl-nucleotide exchange factor activity. Is an ortholog of C. elegans Y105E8A.25. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

6 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19790c.1 CBG19790c.1   [unknown]
Transcript:CBG19790d.1 CBG19790d.1   [unknown]
Transcript:CBG19790e.1 CBG19790e.1   [unknown]
Transcript:CBG19790f.1 CBG19790f.1   [unknown]
Transcript:CBG19790b.1 CBG19790b.1   [unknown]
Transcript:CBG19790a.1 CBG19790a.1   [unknown]
 

Other

6 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19790d CBG19790d   [unknown]
CDS:CBG19790e CBG19790e   [unknown]
CDS:CBG19790b CBG19790b   [unknown]
CDS:CBG19790c CBG19790c   [unknown]
CDS:CBG19790a CBG19790a   [unknown]
CDS:CBG19790f CBG19790f   [unknown]

0 RNAi Result

1 Allele

Public Name
WBVar00027712

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG25430, CATCGAGTCCACCTCCGGAACCTTATGAACCGCCGAGAAGAGTCAATTTTAATTTAAGCA, WBGene00086844   Expr1059449 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG19792, AGTCTCGCCATATAAAGCCAGTGATCAGTCGTGGAAGGATAAGATGCCACCATTTGGAAT, WBGene00038956   Expr1051900 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG19790, TTGCAAGAACGAAGCCACGTAGAATTCAGACGTTCCACGGAACCTCTCAACCTCAAGGAT, WBGene00038954   Expr1066749 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term