WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039327 Gene Name  Cbr-mec-12
Sequence Name  ? CBG20310 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule-based process. Predicted to be located in microtubule. Is an ortholog of C. elegans mec-12. In C. elegans, mec-12 is involved in several processes, including positive regulation of multicellular organismal process; response to mechanical stimulus; and thigmotaxis. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG20310.1 CBG20310.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG20310 CBG20310   [unknown]

0 RNAi Result

23 Allele

Public Name
WBVar00053664
WBVar00053639
WBVar00053634
WBVar00053629
WBVar00053624
WBVar00053654
WBVar00053659
WBVar00053644
WBVar00053649
WBVar00053619
WBVar00053614
WBVar00053604
WBVar00053609
WBVar00053599
WBVar00053594
WBVar00053589
WBVar00128520
WBVar00128524
WBVar00128523
WBVar00128522
WBVar00128521
WBVar00128526
WBVar00128525

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-mec-12, CAAATTCGACCTTATGTACGCCAAGAGAGCATTTGTCCACTGGTATGTTGGAGAAGGAAT, WBGene00039327   Expr1052419 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  located_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term