WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00040127 Gene Name  Cbr-sax-2
Sequence Name  ? CBG21317 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in cell morphogenesis. Is an ortholog of C. elegans sax-2. In C. elegans, sax-2 is involved in neuron projection development. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG21317.1 CBG21317.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG21317 CBG21317   [unknown]

0 RNAi Result

14 Allele

Public Name
WBVar00045339
WBVar00016029
WBVar00045344
WBVar00129799
WBVar00045314
WBVar00129798
WBVar00045349
WBVar00045319
WBVar00045354
WBVar00045324
WBVar00045359
WBVar00045329
WBVar00045364
WBVar00045334

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-sax-2, GGTGCTTCTCCTAGCCAACAAACGATATGTACAGGCTTTGCAGGCGGTTCGACAACTCAG, WBGene00040127   Expr1057334 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  involved_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term