WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00041418 Gene Name  Cbr-spcs-3
Sequence Name  ? CBG22979 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in signal peptide processing. Predicted to be located in membrane. Predicted to be part of signal peptidase complex. Is an ortholog of C. elegans spcs-3. In C. elegans, spcs-3 is involved in IRE1-mediated unfolded protein response. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG22979.1 CBG22979.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG22979 CBG22979   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG22979, GTTAAAACCAAGTACTACTTCTTGGACGACGGAGCGCACTTGTTGAAGCACGACAATGTG, WBGene00041418   Expr1052247 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  involved_in
  located_in
  part_of

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  located_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term