WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00055768 Gene Name  CRE04813
Sequence Name  ? CRE04813 Organism  Caenorhabditis remanei
Automated Description  Predicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans avr-15; lgc-36; and lgc-37. In C. elegans, avr-15 is involved in action potential; locomotion involved in locomotory behavior; and regulation of nematode pharyngeal pumping. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis remanei 31234

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CRE04813.1 CRE04813.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CRE04813 CRE04813   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CRE04813, CTTCTGTTATTTGTTGGTTATTTTAGCATTGATTGAGTATGCGTGTGTTGCATATTCCAA, WBGene00055768   Expr1114511 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

6 GO Annotation

Annotation Extension Qualifier
  involved_in
  located_in
  enables
  enables
  enables
  involved_in

0 Homologues

0 Locations

6 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  located_in
  enables
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term