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Transcripts that showed significantly increased expression in Ppa-sul-2(tu1069) animals comparing to in wild type PS312 animals at J4.12 stage. |
DESeq244(version 1.18.1) with two criteria, P-value < 0.05 and Fold change > 2. |
WBPaper00064862:Ppa-sul-2(tu1069)_J4.12_Up
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Bacteria infection: Bacillus thurigiensis DB27 |
Pristionchus pacificus Genes with expression levels changed significantly after treatment of Bacillus thurigiensis DB27. |
Differential expression were calculated by empirical eBayes method using eBayes function. P_value <= 0.01 and log2 fold change > 1 were used to call differentially expressed genes in all datasets. |
WBPaper00041606:PP_B.thuringiensis-DB27_regulated
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Germline ablation |
Genes that showed differential expression in the comparison of germline-ablated animals fed on S. marcescens versus germline-ablated animals fed E. coli OP50. |
Differential expression was calculated by empirical Bayes method using the eBayes function, and control of FDR was employed as the multiple testing correction. Authors used cutoff of absolute log2 fold change greater than or equal to 1.5 AND p_value less than or equal to 0.05 to call differentially expressed genes. |
WBPaper00041466:PP_S.marcescens_regulated
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